forge.ird.fr
espace-dev/sen2chain
Simple utility to download and process Sentinel-2 images
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
lemar/active_acoustics/azfp_data_processing
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
us191/oceano
oceano toolbox (perl, matlab, python)
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
phim/cunnac/genomicsr
A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
us191/TSG-QC
TSG-QC is a software for interactive analysis and validation of underway SST / SSS (Sea Surface Temperature and Sea Surface Salinity) measurements from a SeaBird Thermosalinograph (TSG). It has been developed under Matlab.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
us191/tsg-qc-compiler
Project use to manage Matlab compiler versions
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marbec/ob7/quarto-ob7-letter-extension
Quarto letter extension for Ob7
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mivegec/dainat/MBaP
Mutualize Bacterial Predictors
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marbec/ob7/training/quarto-training
https://marbec.pages.ird.fr/ob7/training/quarto-training
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
espace-dev/personnels/alexandre/s1tiling_jupyter
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
phim/sravel/snakecdysis
Are you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines? Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!
Last synced at: about 1 year ago - Stars: 2 - Forks: 0
espace-dev/personnels/longour/geohealth/kobolite
an R package to retrieve data from KoboToolBox API
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
transvihmi/nfernandez/RQC
Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.
Last synced at: about 1 year ago - Stars: 2 - Forks: 0
diade/dynadiv/structural_variants_analysis_pearl_millet
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mivegec/dainat/malbec-unix-basics
Materials for Learning Bioinformatics and Enhancing Competencies - Unix basics
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
espace-dev/personnels/roux/particulate-matter-in-brazil-based-on-cams-products
Offers tools to download, process, visualize particulate matter (PM2.5 and PM10) concentrations in Brazil.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
marbec/ob7/open-science/dmp
Ob7's Data Management Plan
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amap/amapvox/AMAPVox
LiDAR data voxelisation package
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
phim/xplain/xplain_grist_dbs
This is a place were sits everything that is needed to implement the xplain girst instance that gather our databases (images, widgets, etc...) appart of course from the girst files themselves that need to remain private.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
amap/amapvox/amapvox-legacy
**AMAPVox, LiDAR data voxelisation software** Copyright (c) https://www.ird.fr (Institut de Recherche pour le Développement) 2016-2022 https://amapvox.org
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
espace-dev/doc/formation/python-sig-programmation
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
mivegec/lardeux_public/collectes-de-terrain-avec-qfield-et-qgis
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
transvihmi/nfernandez/GeVarLi
GeVarLi pipeline for AFROSCREEN ANRS
Last synced at: about 1 year ago - Stars: 3 - Forks: 0
espace-dev/personnels/longour/geohealth/documentation/rspatial-for-onehealth
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mivegec/dainat/malbec-fair-principles-and-data-lifecycle
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
transvihmi/nfernandez/slam
SLURM Lightweight Automated Manager
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
doc-forge/doc-forge.pages.ird.fr
https://doc-forge.pages.ird.fr
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
phim/sravel/EffiCAZ
Annotation of virulence factor of fungi (Effector , Cazyme ...)
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
espace-dev/personnels/moua/correction_biais_echantillonnage
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
diade/training_ont_from_lab_to_bioinfo
Molecular biology laboratory experiences and bioinformatics focus in Oxford Nanopore Technology ONT.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mivegec/valero_mariadb-5-5-no-volume
Le Dockerfile de MariaDB 5.5 (20171210) mais sans le volume.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0
mivegec/valero_webdav
Serveur WebDAV Copié de https://github.com/MorrisJobke/owncloud-docker
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0
phim/sravel/PodiumASM
Long-read sequencing is a highly accurate approach that can be used to challenging genomes, such as those containing stretches of highly repetitive elements and lot of structural variant. Long read sequencing can also be used to generate de novo assembly and genome finishing applications Lot of tools are used to make genome assembly with long reads every day and sometimes you don't know wich Assembler tool is the best for your organism. PodiumASM is here for you ! PodiumASM is is an open-source, scalable, modulable and traceable snakemake pipeline, able to compare multiple long read assemblies obtained from multiple assemblers tools. The workflow PodiumASM can help you to choose the best assemblies among all possibilities.
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
diade/culebront_pipeline
dojo snakemake assemblage long reads
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
phim/cunnac/r_cibig_2024
Material used to teach the R module at the 2024 session of the International Certificate in Bioinformatics and Genomics (CIBiG).
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
phim/sravel/DNAnnot
This pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
Last synced at: about 1 year ago - Stars: 2 - Forks: 0
lemar/active_acoustics/echosoundercalibration
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
mivegec/dainat/malbec-git
Materials for Learning Bioinformatics and Enhancing Competencies - Git
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
us191/datagui
dataGUI est un outil de visualisation en Perl/Matlab de données océanographiques. Utilisé lors d’une campagne, il permet de valider et contrôler rapidementla qualité des données en temps quasi-réel.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
espace-dev/personnels/roux/satscan-senstivity-to-global-population-estimates
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
cesbio/modelisation/modspa_pixel
Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
transvihmi/nfernandez/Clade-I_Mpox-virus_genomic-diversity_DRC
429 newly generated MPXV Clade-I genomes from DRC from 2018 to 2024.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mivegec/dainat/malbec-containers
Materials for Learning Bioinformatics and Enhancing Competencies - Containers
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diade/opensimroot_pearlmillet/osr_pearlmillet
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
lemar/active_acoustics/multifrequency_classification
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
diade/recombination_landscape/biparental-lc-ngs-snakemake
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mivegec/dainat/malbec-nf-core
Materials for Learning Bioinformatics and Enhancing Competencies - nf-core
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espace-dev/personnels/teillet/aedes_breeding_sites_modelling
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mivegec/dainat/malbec-conda
Materials for Learning Bioinformatics and Enhancing Competencies - Conda
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marbec/ob7/training/git-training
https://marbec.pages.ird.fr/ob7/training/git-training
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
