panREPET

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

JSON API: https://repos.ecosystem.code.gouv.fr/api/v1/hosts/forgemia.inra.fr/repositories/urgi-anagen%2FpanREPET

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License: cecill-2.0
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Created at: over 5 years ago
Updated at: about 1 year ago
Last synced at: about 1 year ago

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forgemia.inra.fr / urgi-anagen / panREPET