forgemia.inra.fr / urgi-anagen / panREPET

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

JSON API: https://repos.ecosystem.code.gouv.fr/api/v1/hosts/forgemia.inra.fr/repositories/urgi-anagen%2FpanREPET

• Files
• Readme
• Dependencies