forgemia.inra.fr
scanner3d/analysemorphologique
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
biosp/static/test
http://biosp.pages.mia.inra.fr/static/test/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dipso/eosc-pillar/dataverse-renku-connector
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pole-migrateurs/renosaum/bretagne/abundance
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
enseignement-mistea/reports-with-markdown
Markdown and R markdown templates created for teaching purposes at INRA MISTEA.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
metagenopolis/meteor
Meteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
migale/wf_caviar
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
geapsi/ecp-paper/ortholegkb_data
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
irhs-bioinfo/biseps
Bisulfite Sequencing Processing Software : Snakemake Pipeline
Last synced at: about 1 year ago - Stars: 1 - Forks: 1
beyond/beyond-es-indexation
Beyond project
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metexplore/tools/metabolomics2network
Python code to map metabolites (including lipids) to metabolic networks using ontology.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
dipso/onyxia-helm-charts-interactive-services
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/covid19-mortality
A quick overview of the changes of Covid-19 mortality in the most affected countries of the European Union + the United Kingdom and of Africa. https://umr-astre.pages.mia.inra.fr/covid19-mortality/
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/force_of_infection_lidiski
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/nimbletempdev
R package for modelling arthropod development rates (mean and variance) as a function of temperature in nimble. Adapted from the PhD work of Soledad Castano (http://www.theses.fr/223623849).
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/asf-challenge
Collaborative repository of the ASTRE team for the ASF challenge. https://www6.inrae.fr/asfchallenge/
Last synced at: about 1 year ago - Stars: 0 - Forks: 1
genotoul-bioinfo/jvenn
jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).
Last synced at: about 1 year ago - Stars: 1 - Forks: 1
umr-astre/sit-methods
https://umr-astre.pages.mia.inra.fr/sit-methods/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
umr-astre/sit-reunion
Population suppression using boosted-SIT technique in La Réunion. https://umr-astre.pages.mia.inra.fr/sit-reunion/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/fmd_risk_validation
Validation of a qualitative risk assessment of Foot-and-Mouth Disease in Tunisia with observed data. https://umr-astre.pages.mia.inra.fr/fmd_risk_validation/
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
genotoul-bioinfo/dgenies
Dotplot large Genomes in an Interactive, Efficient and Simple way
Last synced at: about 1 year ago - Stars: 3 - Forks: 0
umr-astre/culicoides-friction
Dispersion of _Culicoides imicola_ using friction maps https://umr-astre.pages.mia.inra.fr/culicoides-friction
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/capiche
Epidemics at the interface between domestic and wild swines in Corse (ContActs Pigs CorsE). https://umr-astre.pages.mia.inra.fr/capiche/
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/topomatch
Match toponyms by similarity
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/geonetwork
Networks/graphs with geo-localised nodes https://umr-astre.pages.mia.inra.fr/geonetwork/
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/sit-sudan
https://umr-astre.pages.mia.inra.fr/sit-sudan
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dipso/bridge-datainrae-nextcloud
App Nextcloud permettant de publier des fichiers du Nextcloud INRAE vers DataINRAE
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
umr-astre/confint_ratio
Confidence intervals for a ratio of variables. https://umr-astre.pages.mia.inra.fr/confint_ratio/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/difuse
Projet Difuse Activite 1: Caractérisation de la diversité des pratiques et des points de vue des acteurs manifestant leur volonté de s’engager dans le changement face aux urgences socio-écologiques au sein la Recherche Pour le Développement.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
datasets/envirotyping_sunrise
Dataset for the environmental characterization of the field experiments conducted in the SUNRISE project
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
bios4biol/workflows
List of workflows (nextflow/snakemake) tested for Genotoul Cluster.
Last synced at: about 1 year ago - Stars: 2 - Forks: 2
umr-gdec/isbpfinder
isbpFinder is a Perl script dedicated to design ISBP (Insertion Site Based Polymorphism) markers.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
anaee-dev/docker_registry
Projet pour déposer les images docker générées dans les autres projets anaee-dev
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
genotoul-bioinfo/metagwgs-test-datasets
Repository containing input and output datasets to perform tests on metaGWGS
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
anaee-dev/coby
Annotation pipeline (transform SGBDR/CSV data to rdf)
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
urgi-anagen/caulifinder_docker
In frame of EVENT project, all code to build a docker image for the Caulifinder tool. It allows discovering Caulimoviridae sequences in plant genomes.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
genotoul-bioinfo/srna-tabac
This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
genotoul-bioinfo/dgenies-viewer
A viewer using D-Genies
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
genotoul-bioinfo/jflow
We introduce jflow, a Workflow Management System (WMS), composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
asterics/user_documentation
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
canular/presentation-canular
Projet pour élaborer le support de présentation du projet CANULAR. Le document est en LaTeX et le CI/CD permet de générer directement un fichier PDF.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
geekus-biologicae/gitrstudio
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
singularity/bioinfo/bcftools_v1.15
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
get-nextflow-ngl-bi/test-data
Repository of test data
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
formationcalcul2023/formation-linux
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
urgi-anagen/te_finder
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
umrf/utopia
UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
inter_cati_omics/hackathon_snakemake_singularity_stats
Singularity receipe for stats software stack used in snakemake short tutorial
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
prose/deepomics-submission
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
biocom/biocom-pipe_manual
Latex manual source code
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
metexplore/met4j
Java library for metabolic networks
Last synced at: about 1 year ago - Stars: 3 - Forks: 2
umr-astre/spreadrate
Estimate the spread-rate of epidemics https://umr-astre.pages.mia.inra.fr/spreadrate/
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/cirad
Cirad institutional LaTeX package
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-astre/amr-laos
Multiple Factor Analysis (MFA) of Knowledge-Attitude-Practice survey responses of Laos' farmers on Antimicrobial resistance.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
record-open-archives/recmoustics
archive du projet recmoustics Un modèle d'irrigation couplé au modèle bio-physique STICS
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
record-open-archives/rec-crash
The computer-model tool CRASH (Crops Rotation and Allocation Simulator using Heuristics) aims at helping technical advisors in supporting farmers in their choices and anticipating agricultural water needs depending on crop acreage.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
agriterix/doc
Documentation and presentation materials of the project
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
work4graph/bootcamp-neo4j-2022
Organisation d'un bootcamp autour de l'intégration et la visualisation de données avec Neo4J, adossé en amont d'une formation Neo4J en ligne. Site web : https://work4graph.pages.mia.inra.fr/bootcamp-neo4j-2022/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
metexplore/tools/degradation-products-search
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
gafl/pipelines_snakemake/check_sequencing
Check fastq files for md5 and number of lines between fastq1 and fastq2
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dipso/eosc-pillar/dataverse-vitam-archiving
Archiving packages generation and export from Dataverse to Vitam platform.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pole-migrateurs/modeles/quarto-extension
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
inter_cati_omics/web/wiki
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pole-migrateurs/bibliometrics4hal
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/ijpb/rflomics
L'application rflomics est un package R couplé à une interface shiny permettant la gestion, l'analyse et l'intégration statistique de plusieurs jeux et types de données -omics: RNAseq, proteomics et metabolomics (pour le moment). Lien vers l'application : https://rflomics.sk8.inrae.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/agroecosystem/absys/agroforestreeadvice
AgroforesTreeAdvice est un comparateur d’avis sur les essences d’arbres à planter en agroforesterie: il regroupe, sous une interface unique et multilingue, plusieurs outils de sélection d'arbres (espèces, variétés, porte-greffes) développés dans plusieurs pays. https://agroforestreeadvice.sk8.inrae.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
gryc-data/naumovozyma_castellii-cbs_4309
Naumovozyma castellii CBS 4309 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
gryc-data/lachancea_thermotolerans-cbs_6340
Lachancea thermotolerans CBS 6340 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
umr-1202-biogeco/snakemake_singularity_hpc
Tutorial example for creation of a snakemake workflow using a singularity container on a hpc
Last synced at: about 1 year ago - Stars: 0 - Forks: 1
agroecoperenne/scripting/python-module
A python module to explore and use the agroecoperenne database
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
metexplore/cbm/fvabiomarkers
Juliette's internship project
Last synced at: about 1 year ago - Stars: 1 - Forks: 0