forgemia.inra.fr
umr-gdec/agr-ancestral-genome-reconstruction
Last synced at: almost 2 years ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-tetis/stac/stac-notes
Share some notes and scripts on the use of STAC.
Last synced at: about 1 year ago - Stars: 1
in-wop/vgest
VGEST is software developped in Pascal which serve to calculate water volume limits to be respected in reservoirs set up in parallel on a hydrographic network, to allow the best future satisfaction of a common downstream management objective.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
get-nextflow-ngl-bi/wf-illumina-nf
Pipeline Nextflow
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/atelier_4_si_brapi/hackathon-brapi
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
jt/presentation-vue
https://j-touchais-pages.pages.mia.inra.fr/presentation-vue
Last synced at: almost 2 years ago - Pushed at: over 1 year ago - Stars: 0
metexplore/metexplore-api/metexplore3-nodejs-api
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0
inter_cati_omics/hackathon_octobre2021/atelier_repro
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migale/dubii_magali_monnoye
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metagenopolis/eskrim
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
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formationcalcul2023/formation-slurm
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1
adminforgemia/doc-public
Dépôt public de documentations pour les utilisateurs de ForgeMIA. Contact : support-forgemia@inra.fr
Last synced at: about 1 year ago - Stars: 8
gravit/gbs
All scripts concerning GBS analysis
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
miat-com/miat_website
[Site web de MIAT](https://miat.inrae.fr), avec wowchemy (hugo). Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages.mia.inra.fr/miat_website Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @benjamin.linard, @gauthier.quesnel, @philippe.bordron ou @rtrepos
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 4
singularity/bioinfo/bwa_v0.7.17
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
singularity/bioinfo/fastqc_v0.11.8
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
urep/dev_utils/gitlab-project-templates/r-package-project-template
A Gitlab project template for an R package. Use it as a base for a new R package project. See README for details.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
lisc/gender-diff-model
https://lisc.pages.mia.inra.fr/gender-diff-model/ Web application for playing with the gender differenciation model published by S. Huet, F. Garguilo and F. Pratto in 2020.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
asm4pg/GenomAsm4pg
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
singularity/prebuilt/miniconda3-py39
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formationcalcul2022/formation-linux
Initiation à linux
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dynamo/introduction-to-modelling-in-epidemiology
Introduction à la Modélisation en Épidémiologie Animale
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0
urep/dev_utils/gitlab-ci-templates
Some templates useful for Gitlab CI Yaml scripts.
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mathscell/vkvh
kvh viewer
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singularity-mesolr/acta-cfd-1.0.0
Container pour l'équipe ACTA composé de incompact3d, PALM, WRF et OpenFoam en Ubuntu 18.04. Johan Carlier, Laurence Wallian
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urep/dev_utils/fortran_utils/netcdf
Library to manage in Fortran machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
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geapsi/pipeline/specifics_ortho_kb
Nextflow pipeline creating a Neo4j Ortho_KB database.
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metexplore/cbm/pva
pathway variability analysis using the miom library
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migale/metabarfood
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dipso/eosc-pillar/dataverse-d4science-connector
Connecteur permettant les échanges de données entre dataverse et D4Science (https://www.d4science.org/)
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_octobre2021/shinyDataScience
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
umrf/exploremetabar-docker
Docker recipe for exploremetabar Shiny App.
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migale/trainings
Repository of Migale trainings https://trainings.migale.inrae.fr/
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inter_cati_omics/hackathon_octobre2021/hackathon_datascience_2021
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1
pole-migrateurs/Acoustic/acoustic-gui
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
dipso/kubespray
Fork from https://github.com/kubernetes-sigs/kubespray.git
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dynamo/software/emulsion-training
On-line doctoral training on EMULSION
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umr-astre/rvf_mrt
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dipso/helm-charts-sill
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umr-gdec/wheatdata
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singularity/bioinfo/sambamba_v0.7.1
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-tetis/stac/simplestac
STAC tools to simplify STAC use: local STAC creation, filter and process STAC ItemCollections (local and remote). __[Documentation](https://umr-tetis.pages.mia.inra.fr/stac/simplestac)__
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
umr-astre/arbocartoR
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metagenopolis/benchmark_mock
Benchmark second and third generation sequencing technologies on 3 synthetic microbial communities
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
dipso/logigrammes-ouverture
Logigrammes produits par la DipSO et la DAJ INRAE permettant d'identifier les conditions possibles d'ouverture des données et codesscientifiques.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
cropmetapop/CMPynalyser
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umr-astre/notification-delays
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umr-astre/training/2023_lidiski_data-management
Workshop on data management. https://umr-astre.pages.mia.inra.fr/training/2023_lidiski_data-management/
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pegase/pegase-fair
FAIR-DATA management application stack for laboratory experiment
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urfm/sureau_shiny
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metexplore/met4j-group/tutorialmet4j
Tutorial for met4j
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GNet/appinetwork
Construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes
Last synced at: about 1 year ago - Stars: 0 - Forks: 1
GNet/einkorn_grain_transcriptome
Transcriptomic results of the projet of Bonnet et al
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umrf/ranomaly
https://umrf.pages.mia.inra.fr/ranomaly/
Last synced at: about 1 year ago - Stars: 2 - Forks: 2
sk8/sk8-apps/ettis/shinyidea
ShinyIDEA permet d'insérer un fichier de données issues de la méthode IDEA4 et de visualiser des premiers résultats synthétiques avant d'exporter des rapports complets sous différents formats. https://shinyidea.sk8.inrae.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-gdec/gps
Scripts used in: "Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints" S. Ben-Sadoun, A. Fugeray-Scarbel, J. Auzanneau, G. Charmet, S. Lemarié, S. Bouchet
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
beyond/beyond-vre/dataflow-beyond
R scripts for Geonetwork metadata feeding. The scripts are based on the geometa ISOMetadata and geonapi examples given by Emmanuel Blondel (Emmanuel Blondel. (2018, August 22), Blondel, Emmanuel. (2018, April 27)).
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/guidelines/statstips
Source repository for https://umr-astre.pages.mia.inra.fr/guidelines/statstips/
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gqe-base/coda
Published version of CODA (Crossover Distribution Analyzer) with graphical interface, for Linux, Mac, and Windows
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umr-astre/guidelines/doc-references
Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1
abisoft-gqe/metaqtl
MetaQTL is a Java package designed to perform the integration of data from the field of gene mapping experiments (e.g molecular markers, QTL, candidate genes, etc...). This package consists in a modular library and several programs written in pure Java. These programs can perform various tasks, including formatting, analyzing and visualizing data or results produced by MetaQTL.
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metagenopolis/journal_simulations
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hydrodemos_public/demosbagoffloods
Pages web interactives, test
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genotoul-bioinfo/dgenies-docker
Docker files to test and deploy dgenies
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formations-statistique/statswithasterics
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blockchain-esr/bloxberg-certify-metadata
Last synced at: almost 2 years ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/metexplore/samba
SAMBA (R) est une interface pour analyser les résultats de sampling de réseaux métaboliques générés à partir de SAMBApy sous Python. Elle est composée d'une une partie comparaison (calcul de différence) et une partie visualisation graphique des résultats. https://samba.sk8.inrae.fr/
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cassiopee/nghyd
Angular interface of the Cassiopée software Production version of Cassiopée is available at https://cassiopee.g-eau.fr
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pole-migrateurs/ore-diapfc/bresle/length-of-sea-trout-returns
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
ecoelec/ecoelecAnalysis
Doc : https://ecoelec.pages.mia.inra.fr/ecoelecAnalysis/index.html
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dipso/hal-inrae/alienor
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umr-astre/CameroonBatEbola_Public
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
herelles/herelles-corpora-builder
Automatic protocol for the constitution of spatio-temporal and thematic corpora for the Herelles project.
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metexplore/metexplore-api/metexplore3-api-types
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
get-plage_public/ngs_tools
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
inter_cati_omics/hackathon_octobre2021/django-vue-interface
Interface en vue.js pour l'atelier Django-vue 2021.
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pherosensor/pherosensor-toolbox
Toolbox for the inverse problem solution to identify sources of pheromone emission.
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birdnet/FlywayNet_experiments
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
biocom/data_paper_rmqs1_16s
Datapaper describing dataverse collection on RMQS1 microbiological dataset (The French Soil Quality Monitoring Network). https://entrepot.recherche.data.gouv.fr/dataverse/rmqs_microbio
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pappso/libpwizlite
A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
pappso/pappsoms-tools
set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
metexplore/tools/twin-search
Tool for 'Twin Peaks' analysis, detecting pairs of heavy & native forms of compounds in mz data
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PO2-Tools/po2-engine
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sk8/sk8-apps/gqe/shinyteach/gqe-evolexp
https://gqe-evolexp.sk8.inrae.fr
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urep/dev_utils/fortran_utils/docker-fortran-intel-compiler
Docker image with Intel Fortran Compiler (and some other dev tools).
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singularity-mesolr/r-stan-nguyent
R-stan for Meso@LR (Truong An Nguyen)
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phenobois/cavisoft
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
game-theory-tools-group/nash-eq-wilson-to-binder
A Dockerfile exposing to binder the Nash Eq Wilson
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game-theory-tools-group/gtnash
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 4
stacomi/stacomirtools
Database connection utilities, RODBC and pool
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0