forgemia.inra.fr
migale/dada2_frogs
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
tropo-group/tropolink_frontend
Tropolink frontend
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
xamarin/projects/BleNrf52Uart
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/training/sit
Training on Sterile Insect Technique. https://umr-astre.pages.mia.inra.fr/training/sit/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
inca-hsmm/rhsmmpp
Last synced at: almost 2 years ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
agriterix/shinytest
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
abisoft-gqe/shinemas-tutorial
Tutorial dataset and executable script to install SHiNeMaS tutorial instance
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
urep/dev_utils/inrae_urep_software_license
This project contains the software license used at INRAe/UREP
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/training/smcr
Contrôle de versions; Gestion de données; Reproducibilité et données géographiques en R
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
ices_imes_analysis/icescreen
ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Firmicutes genomes.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
cati-boom-public/inter-cati
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
ices_imes_analysis/icescreen_documentation
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
lbe/sequencing/2022-axel-rous/sequencing
Script for analysis of sequencing results from import to barplot and ACP
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
gryc-data/zygosaccharomyces_rouxii-cbs_732
Zygosaccharomyces rouxii CBS 732 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
gryc-data/zygosaccharomyces_bailii-clib_213
Zygosaccharomyces bailii CLIB 213 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
gryc-data/yarrowia_lipolytica-a101
Yarrowia lipolytica A101 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
gryc-data/yarrowia_lipolytica-h222
Yarrowia lipolytica H222 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
gryc-data/kazachstania_naganishii-cbs_8797
Kazachstania naganishii CBS 8797 complete genome and annotation data.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
pappso/hipl
HIPL stands for heavy isotope protein labelling. It is basically a project where we use IsoSpecPy for simulating isotopic clusters of peptides that were labelled with 15N.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
cropmetapop/cmpfitness
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
GNet/pipelineoge
Pipeline to analyze gene expression and organellar gene expression specificities (C-to-U RNA editing, splicing and processing) from RNAseq data. It conducts mapping-counting steps and differential analysis for gene expression, splicing and editing.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
epgv/nlgenomesweeper
search a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vinifera. https://doi.org/10.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
in-sylva-development/in-sylva.search
Search engine for IN-SYLVA Information System
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
pappso/groupingprotein
GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
mychoice/public
MyChoice application's public repository
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pole-migrateurs/Acoustic/acoustic-v2
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metexplore/websemantic/extraction-pipeline
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
seqoccin/GenomOrder
Nextflow GenomOrder pipeline
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
gqe-base/cnvmap
Linkage-based detection of copy-number variants from marker segregation data in mapping populations
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
urep/dev_utils/java_utils
Utility classes for java development
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
urep/docs/formations/formation_r/initiation
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
agriterix/import-export
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metexplore/gsam
compute Genome Scale Atom Mapping
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
metexplore/cbm/met4j-flux-obsolete
Obsolete. This modular version was not easy to manage. See packages in orgemia.inra.fr/metexplore/cbm/met4j-flux
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
umr-astre/training/data-management
Slideshow on good practices in data management. https://umr-astre.pages.mia.inra.fr/training/data-management/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
agroclim/Indicators/indicators-java
Bibliothèque Java pour calculer des indicateurs agro- et éco-climatiques à partir de données climatiques journalières ou horaires et des donnés phénologiques. Un des modèles phénologiques peut être utilisé à la place des données phénologiques. ([Documentation en ligne](https://agroclim.pages.mia.inra.fr/Indicators/indicators-java))
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pepragrodiv/pangenome/pansel
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
optforests/oak-provenance-dendro
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
cassiopee-projects/cassiopeer
R package wrapping the jalhyd library
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
rdg/entrepot/anr-projects
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
rdg/rdg-portal-maintenance
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
elisemaigne/slides/insee_package_renv
Présentation du package R renv https://elisemaigne.pages.mia.inra.fr/slides/insee_package_renv/presentation.html
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metagenopolis/onenet
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
elisemaigne/slides/2021_git
Présentation de git et de son écosystème dans le cadre des rencontres ingénieurs statisticiens de Toulouse (dec. 2021). https://elisemaigne.pages.mia.inra.fr/slides/2021_git/#1
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/lessem/loup-france-evolution
Cette application est une cartographie interactive de l'évolution de la présence du loup en France, à partir des données Carmen (répartition par mailles). https://loup-france-evolution.sk8.inrae.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
holooligo/omnicrobe_web
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
genepi/analyses/rosepigs_stomach
RNAseq and EMseq analyses for the rosepigs project on stomach mucosa samples
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dynamo/software/PASTE-public-release
PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
urep/models/modvege/modvege-r
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
biosp/static/perso
http://biosp.pages.mia.inra.fr/static/test/perso.html
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
migale/ngs-pipeline-comparison
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
ateliers_codons/test_git
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
singularity/bioinfo/bamUtil2rm
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
singularity/bioinfo/nudup_v2.3.3
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
singularity/bioinfo/gatk_v4.1.4.1
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/metexplore/champ
https://champ.sk8.inrae.fr CHaMP is an RShiny app that loads a list of compound masses from twin-peaks analysis, and build a mass difference network from which is extracted the connected component containing a mass of interest. It provides a network visualization of the sub-network that encompass potential metabolic and spontaneous reactions that leads to degradation/metabolization products.
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
4p/modules/phis-export-l2
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metabohub/web-components/viz-mask
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metexplore/goliath/goliath-models
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/miat/sombrero
Online version of the shiny application of the R package SOMbrero to performs Self Organizing Maps (https://sombrero.sk8.inrae.fr)
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pappso/masschroq
MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
pappso/xtpcpp
X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra. Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
cropmetapop/cropmetapop
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
infosol/sensor-map
ETL tool that transforms the result of SQL queries into json, xml or any other specific format
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
exploratory-penalized-regression/paper-script-and-data
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
metexplore/cbm/dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library github mirror: https://github.com/MetExplore/dexom-python
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
urep/soere-pp/meteosolApp
Shiny app to manage data from Bio Meteorological stations
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
irhs-bioinfo/bisepsgui
Electron Desktop App For Bisulfite Sequencing Processing Software (BiSePS)
Last synced at: about 1 year ago - Stars: 2 - Forks: 0
irhs-bioinfo/i-fungi
Appli web d'identification de champignons microscopiques.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
eq-record/record-team
A static [web site](https://eq-record.pages.mia.inra.fr/record-team/) to present the team
Last synced at: about 1 year ago - Stars: 2 - Forks: 3
umr-1202-biogeco/how-to-reproductibility
Documentation to help reproductibility of (bio-)informatics project: - organisation - markdown reports - introduction to git
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
couplimspec/couplimspec
Version de référence Reference version
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
biocom/biocom-pipe
A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
pappso/repository-massxpert
Repository for the massXpert packages
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
pappso/repository-minexpert2
Repository for the mineXpert2 packages
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
agriterix/abc-ages
Model of the dynamics of population for French farmers that includes two processes, an installation process and a retirement process. Model calibrated by ABC.
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
gaev/usecases/jupyterhub-ubuntu-vbox
Creation and provisioning a virtual machine (Ubuntu/VirtualBox) containing The Littlest JupyerHub (TLJH)
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
rdg/entrepot/datapapers/enquete-datapapers
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_snakemake_singularity_calling
Singularity receipe for calling software stack used in snakemake short tutorial
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_snakemake_singularity_mapping
Singularity receipe for mapping software stack used in snakemake short tutorial
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
inter_cati_omics/reproductibility
Example GitBook site using GitLab Pages: https://pages.gitlab.io/gitbook
Last synced at: about 1 year ago - Stars: 1 - Forks: 1
inter_cati_omics/hackathon_shiny_2020
Atelier développement d’une application interactive Shiny lors du hackathon inter-CATI omics 2020
Last synced at: about 1 year ago - Stars: 1 - Forks: 0
gaev/packer/windows10
Configurations et scripts pour la création d'une MV sous windows via Packer
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
ijpb-bioinfo-dev/test_docker
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/dsi/bedloadweb
bedloadweb.sk8.inrae.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
ateliers_codons/repo_remote
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sk8/sk8-apps/ara/riverly/makaho
MAKAHO (pour MAnn-Kendall Analysis of Hydrological Observations) est un système de visualisation cartographique interactif permettant d’examiner les tendances présentes dans les données des stations hydrométriques aux débits peu influencés par les actions humaines. Le test de Mann-Kendall permet d’analyser la significativité des tendances de variables hydrologiques sur les différentes composantes du régime des cours d'eau (étiages, moyennes-eaux, crues), à mettre ensuite en relation avec les impacts du changement climatique sur l’hydrologie de surface. https://makaho.sk8.inrae.fr
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
mathnum/mathinfo
Archives HTML du site Drupal 9 : https://mathnum.pages.mia.inra.fr/mathinfo/
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0
