forgemia.inra.fr
singularity/microservices/thaliadb
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singularity/microservices/apache2
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singularity/prebuilt/r-essentials.3.6_conda
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pappso/i2masschroq
i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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pappso/libmassgui
libmassgui is a C++ static library that is referenced from other projects. The libmassgui static library is designed to enshrine the gui functionalities needed by the following two projects: msXpertSuite/massXpert; msXpertSuite/mineXpert2. libmassgui has a companion GUI library, libmass , that is designed to enshrine the non-GUI functionalities needed by the same two projects above.
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pappso/specoms
C++ implementation of SpecOMS and new developments
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efno/bac-a-sable-efno
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
gt-maiia/journees-thematiques-2023
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singularity/bioinfo/samtools_v.1.9
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singularity/prebuilt/r-essentials.3.6_mkl_conda
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
lbe/typol/typol_usetox/cf-from-ef3.1-computations
Last synced at: about 1 year ago - Stars: 0 - Forks: 0
lbe/sequencing/2022-axel-rous/article_polarizedcathodeenrichment
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abisoft-gqe/thaliadb
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
abisoft-gqe/optimas
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
stics-formation/sticsrpacks-binder
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
imhorphen/multvardiv
Multivariate generalized Gaussian distribution, Multivariate Cauchy distribution, Multivariate t distribution. Distance between two distributions. Manipulation of these multivariate probability distributions.
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imhorphen/mcauchyd
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imhorphen/mggd
An R package for distance between multivariate generalised Gaussian distributions (MGGD), manipulation of MGGD.
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tropo-group/notebook
Notebooks Jupyter
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singularity/bioinfo/bcftools_v1.11
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emfeed-sys-admin/vm-server-compagnon
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record-open-archives/groundwaternitrogen
pubilc repository for the GroundWaterNitrogen nitrogen content in groundwater model developped during the ATCHA project model documentation: https://record-open-archives.pages.mia.inra.fr/groundwaternitrogen/
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record-open-archives/pump-potential
pubilc repository for the PumpPotential pump flow model developped during the ATCHA project model documentation: https://record-open-archives.pages.mia.inra.fr/pump-potential/
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in-wop/in-wop
Project for generating the IN-WOP main website
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in-wop/seinebasin2
Seine River Basin modelling
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in-wop/sgldatagrabber
R package for grabbing data from Seine Grands Lacs web site (https://seinegrandslacs.fr/fr/quatre-lacs-reservoirs-au-coeur-dun-bassin) and store them on a Thingsboard IoT platform (https://thingsboard.io/).
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in-wop/irmara
Interactive Reservoir MAnagement Risk Assessment (IRMaRA) is a R Shiny interface providing probability of failure of flood and drought objective at key locations downstream of the 4 lakes regulating the Seine River.
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bioger/karyoplot
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scales/differential-analysis-of-trees
Repository code for the article: Neuvial Pierre, Randriamihamison Nathanaël, Chavent Marie, Foissac Sylvain, and Vialaneix Nathalie (2023) A two-sample tree-based test for hierarchically organized genomic signals. Preprint.
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urgi-is/datadiscovery_partners_indexers
Collection of indexer for FAIDARE, WheatIS,
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formationcalcul2022/formation-module-virtualenv-conda
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lpgp/peak_calling
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mix-enable/mix-enable_positive-deviance
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genotoul-bioinfo/ngspipelines
NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.
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cati-prosodie/fair4rs-fr
Traduction française des FAIR4RS Principles (voir README)
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birdnet/FlywayNet
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GNet/high-dimensional_regression_comparison
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pepi-atelier-singularity/atelierforge
Atelier Forge du séminaire CATI/PEPI/Pépinières
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cati-empreinte-public/about-us
A page on CATI EMPREINTE
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asterics/asterics-issues
This project is meant to report bugs or suggestions for the tool ASTERICS. If you don't have a forgemia account : you can find the PUBLIC VERSION of the issues here https://github.com/astericsInrae/asterics-issues. You can also send an email : asterics-tlse@inrae.fr
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stacomi/stacomijava/stacomi-java
Code for JAVA app for stacomi
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bioswimmers/swim-infer
Companion code to the publication 'Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy', Ravel et al.
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decrypt/deterministic-model
Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).
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cropmetapop/cmpconfig
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mpm-at-recover/cbgeo
This project is a custom version of CB-Geo MPM.
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in-sylva-development/metadatastandardandttools/metadatavalidation/in-sylvajsonschemavalidator
Application python pour controler la conformité d'un fichier json en fournissant un schéma json.
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orfeo-toolbox/otb-mlutils
A set of OTB applications for Machine Learning
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orfeo-toolbox/otbonnx
Run deep learning models from pytorch, tensorflow, keras, Caffe2, Microsoft Cognitive Toolkit, Apache MXNet, etc
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pepiniere-jouy/detecteur_co2
Code de l'ESP32 utilisé dans le cadre du projet détecteur de CO2 https://jouy.pepiniere.inrae.fr/#!/projects/detecteur-co2-pour-inciter-a-l-aeration-des-locaux
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pepiniere-jouy/mode_emploi_detecteur_co2
Notice Utilisation Détecteur CO2
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urgi-anagen/panREPET
panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
Last synced at: about 1 year ago - Stars: 2 - Forks: 0
umrf/anomaly
Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.
Last synced at: about 1 year ago - Stars: 2 - Forks: 0
gqe-acep/sesam
The SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.
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UP_StatInfo/linmodel
Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
most/ib-rs
Nous décrivons ici un code Python développé par notre groupe et que nous mettons à disposition de la communauté
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4p/tools/4p-python-library
Python library providing a variety of useful functions for 4P modules
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mpm-at-recover/pycbg
A Python scripting interface for CB-Geo MPM
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orfeo-toolbox/otb-simpleextractiontools
Utils for RS data objects manipulation (extents, etc.)
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orfeo-toolbox/otbtf
The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.
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orfeo-toolbox/pyotb
pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python
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umr-1202-biogeco/initiation_git
A short introduction to git for research for BIOGECO students
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chemhousebas/octave/covsel
Covsel related functions and data
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in-sylva-development/in-sylva.search.app
search.app is used by package search, and implement search processes
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baric/quarto-shiny-sk8
Développement d’une petite application Shiny et déploiement de celle-ci avec sk8, animé par Amandine Velt (SVQV) et Joseph Tran (EGFV) [AG CATI BARIC La Rochelle, 26-28/03/2024] slides: https://baric.pages.mia.inra.fr/quarto-shiny-sk8 tutoriel: https://forgemia.inra.fr/baric/shiny-tutorial
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orfeo-toolbox/docker/otb-deep-light
OTB/ONNX from nvidia/cuda image
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urep/docs/bonpland
BONnes Pratiques sur LA gestioN des Données : https://urep.pages.mia.inra.fr/docs/bonpland
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urep/soere-pp/doc_soere-pp
Documentation pour le SI SOERE Prairies Permanentes : https://urep.pages.mia.inra.fr/soere-pp/doc_soere-pp
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gaev/gaev
Le projet Gestion Automatique d'Environnement Virtuel.
Last synced at: about 1 year ago - Stars: 4 - Forks: 0
couplimspec/couplimspec_20150113
Version du projet stockée sur forge Plastic, correspondant aux modifs faites lors de la réunion du 12 ou 13 janvier 2015.
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gryc-data/saccharomyces_cerevisiae-s288c
Saccharomyces cerevisiae S288c complete genome and annotation data.
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gryc-data/lachancea_lanzarotensis-cbs_12615
Lachancea lanzarotensis CBS 12615 complete genome and annotation data.
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baric/family-companion
Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742
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umr-astre/training/notions_stats
Stage de formation : « Notions de base en statistiques ». https://umr-astre.pages.mia.inra.fr/training/notions_stats/
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couplimspec/hyiam
Boîte à outils Matlab pour la manipulation d'images hyperspectrales
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lbe/opensilexlbe/opensilex-dev
Projet regroupant les codes de l'outil opensilex, systèmes d'Information ouverts pilotés par des ontologies
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